SNP Profiles of MO 20   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCCTTTTTTCCCCAAGGCCGGCT
1._GC-01-121-6-18
CCGGCGCCTTTTTTCCCCAAGGCCGGCT
2._RUQ_1566
_--TT__-____--_
3._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
4._GC-01-121-6-18
CTAACCTTCTCTGTCTCTAAAGCTAACT
5._GC-01-121-6-18
CTAACCTTCTCTGTCTCTAAAGCTAACT
6._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
7._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
8._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
9._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
10._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
11._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
12._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
13._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
14._MO_20
CTAACCTTCTCTGTCTCTAAAGCTAACT
15._GC-01-121-6-18
CTAACCTTCTCTGTCTCTAAAGCTAACT
16._GC-01-121-6-18
CTAACCTTCTCTGTCTCTAAAGCTAACT
17._GC-01-121-6-18
CTAACCTTCTCTGTCTCTAAAGCTAACT
18._GC-01-121-6-18
CTAACCTTCTCTGTCTCTAAAGCTAACT
19._GC-08-167-4-10
CTAACCTTCTCTGTCTCTAAAGCTAACT
20._GC-08-167-4-10
CTAACCTTCTCTGTCTCTAAAGCTAACT
21._GC-08-167-4-10
CTAACCTTCTCTGTCTCTAAAGCTAACT
22._GC-08-167-4-10
CTAACCTTCTCTGTCTCTAAAGCTAACT
23._MO_20
CTAACCTTCTCTGTCTTTAAAGCTAACT
24._RUQ_1566
__GG________CT_CT
25._MO_20
CCGGCCTTCCTTTTCTCCTTGGCCAATT
26._RUQ_1566
__CC___GT_CT_AG_AA_
27._MO_20_Fld#_171_Plt#_1
AGAAGGAAAGAGAC__AAAGAGAAAG
28._MO_20_Fld#_74_Plt#_1
AGAACCAGAAGGAA__AAAAAGAGAA
29._RUQ_1566
AGAAGGAAAGAGAC__AAAGAGAAAG
30._MITC-000675
AGAAGGAAAGAGAC__AAAGAGAAAG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCCACCCGGCCAAAG
1._GC-01-121-6-18
AAGGCCCCGGGGGGCCACCCGGCCAAAG
2._RUQ_1566
___---_-CC-GG-ACGG
3._MO_20
ATCGCTCTCGGG_TTCCCGGTCTACAG
4._GC-01-121-6-18
ATCGCTCTCGGG_TTCCCGGTCTACAG
5._GC-01-121-6-18
ATCGCTCTCGGGAATTCCCGGTCTACAG
6._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
7._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
8._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
9._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
10._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
11._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
12._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
13._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
14._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
15._GC-01-121-6-18
ATCGCTCTCGGGAATTCCCGGTCTACAG
16._GC-01-121-6-18
ATCGCTCTCGGGAATTCCCGGTCTACAG
17._GC-01-121-6-18
ATCGCTCTCGGGAATTCCCGGTCTACAG
18._GC-01-121-6-18
ATCGCTCTCGGGAATTCCCGGTCTACAG
19._GC-08-167-4-10
ATCGCTCTCGGGAATTCCCGGTCTACAG
20._GC-08-167-4-10
ATCGCTCTCGGGAATTCCCGGTCTACAG
21._GC-08-167-4-10
ATCGCTCTCGGGAATTCCCGGTCTACAG
22._GC-08-167-4-10
ATCGCTCTCGGGAATTCCCGGTCTACAG
23._MO_20
ATCGCTCTCGGGAATTCCCGGTCTACAG
24._RUQ_1566
___CTCG___CCCG____
25._MO_20
TTGGTTTTCCGTAACCCCGGGGCCAAGG
26._RUQ_1566
____CGGGAA_CCCG__AC_
27._MO_20_Fld#_171_Plt#_1
ATCGAGAGCGCC_AACCCGAC_AC_
28._MO_20_Fld#_74_Plt#_1
AAGGAAGGCCCC_AACCCCAA_CC_
29._RUQ_1566
ATCGAGAGCGCC_AACCCGAC_AC_
30._MITC-000675
ATCGAGAGCGCC_AACCCGAC_AC_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
1._GC-01-121-6-18
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
2._RUQ_1566
_---CC----__X_XX_XX_X
3._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
4._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
5._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
6._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
7._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
8._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
9._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
10._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
11._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
12._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
13._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
14._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
15._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
16._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
17._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
18._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
19._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
20._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
21._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
22._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
23._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
24._RUQ_1566
_AA_AGGGACCT_CC__X_XX_XX_X
25._MO_20
AGTTCCAACCCCTTGGCCAACCX_XX_XX_X
26._RUQ_1566
___AG____AC__X_XX_XX_X
27._MO_20_Fld#_171_Plt#_1
GGAAAGAGGGACAGACACATCGX_XX_XX_X
28._MO_20_Fld#_74_Plt#_1
GGATAGAAGGAAAGACCCATGGX_XX_XX_X
29._RUQ_1566
GGAAAGAGGGACAGAC_ATCGX_XX_XX_X
30._MITC-000675
GGAAAGAGGGACAGAC_ATCGX_XX_XX_X

Input profile: MO_20

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._MO_20 GC-01-121-6-18

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._MO_20 RUQ_1566

58.3 %
6 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._MO_20

53.9 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

4._MO_20 GC-01-121-6-18

53.9 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

5._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

7._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

8._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

9._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

10._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

11._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

12._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

13._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

14._MO_20

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

15._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

16._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

17._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._MO_20 GC-08-167-4-10

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._MO_20 GC-08-167-4-10

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._MO_20 GC-08-167-4-10

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._MO_20 GC-08-167-4-10

52.6 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._MO_20

51.3 %
39 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

24._MO_20 RUQ_1566

50 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

25._MO_20

47.4 %
39 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

26._MO_20 RUQ_1566

46.2 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._MO_20 MO_20_Fld#_171_Plt#_1

27.9 %
34 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

28._MO_20 MO_20_Fld#_74_Plt#_1

27.9 %
34 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

29._MO_20 RUQ_1566

27.3 %
33 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

30._MO_20 MITC-000675

27.3 %
33 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25